Tools

Design optimal shRNA sequences by knockdown score and position for your target sequence.

Pair-wise comparison of DNA, protein, or translation-based DNA sequences.

Two-dimensional plot for identifying regions with similar features between two DNA or RNA sequences.

Calculate GC content of entire sequence and specific regions.

Predict secondary structures from base pair interactions.

Retrieve reverse, complement, or reverse complement sequences.

Optimize codons according to species, cleavage sites, and clonability.

Retrieve amino acid sequence from DNA input.