Popular shRNA Sequences

VectorBuilder offers many popular vector components that users can choose from when designing their vectors. The tables below provide detailed information on these popular components, which are listed separately by category.
Popular shRNA
NameTarget SequenceTarget GeneTarget PositionReferencesSequence
Scramble[shRNA#1]CCTAAGGTTAAGTCGCCCTCGNone in human and mouseCancer Res. 66:9270 (2006) View
Scramble[shRNA#2]CAACAAGATGAAGAGCACCAATurboGFP; none in human and mouseOncogene. 30:1551 (2011); Science. 343:309 (2014) View
EGFP[shRNA#1]CGACGTAAACGGCCACAAGTTEGFP63-83The RNAi Consortium ID: TRCN0000072193 View
EGFP[shRNA#2]ACGTCTATATCATGGCCGACAEGFP449-469The RNAi Consortium ID: TRCN0000231756 View
LacZ[shRNA#1]GTCGGCTTACGGCGGTGATTTLacZ1734-1754The RNAi Consortium ID: TRCN0000072242 View
LacZ[shRNA#2]GTTCCGTCATAGCGATAACGALacZ1908-1928The RNAi Consortium ID: TRCN0000072238 View
Luciferase[shRNA#1]ATGTTTACTACACTCGGATATFirefly luciferase745-765The RNAi Consortium ID: TRCN0000231737 View
Luciferase[shRNA#2]TGTCCGGTTATGTAAACAATCFirefly luciferase1193-1213The RNAi Consortium ID: TRCN0000072258 View
Scramble[miR30-shRNA#1]ACCTAAGGTTAAGTCGCCCTCGNone in human and mouseDesigned by VectorBuilder View
Scramble[miR30-shRNA#2]CCAACAAGATGAAGAGCACCAATurboGFP; none in human and mouseOncogene. 30:1551 (2011); Science. 343:309 (2014) View
EGFP[miR30-shRNA#1]GCGACGTAAACGGCCACAAGTTEGFP62-83Designed by VectorBuilder View
EGFP[miR30-shRNA#2]AACGTCTATATCATGGCCGACAEGFP448-469Designed by VectorBuilder View
EGFP[miR30-shRNA#3]AAGAACGGCATCAAGGTGAACTEGFP475-496Designed by VectorBuilder View
EGFP[miR30-shRNA#4]CACATGAAGCAGCACGACTTCTEGFP232-253Designed by VectorBuilder View
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